diff --git a/package-lock.json b/package-lock.json
index 23b067710b..804a9a333f 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -55,7 +55,7 @@
         "idiomorph": "0.3.0",
         "jquery": "3.7.1",
         "katex": "0.16.38",
-        "mermaid": "11.12.3",
+        "mermaid": "11.13.0",
         "mini-css-extract-plugin": "2.10.0",
         "minimatch": "10.2.4",
         "pdfobject": "2.3.0",
@@ -2699,9 +2699,9 @@
       }
     },
     "node_modules/@mermaid-js/parser": {
-      "version": "1.0.0",
-      "resolved": "https://registry.npmjs.org/@mermaid-js/parser/-/parser-1.0.0.tgz",
-      "integrity": "sha512-vvK0Hi/VWndxoh03Mmz6wa1KDriSPjS2XMZL/1l19HFwygiObEEoEwSDxOqyLzzAI6J2PU3261JjTMTO7x+BPw==",
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/@mermaid-js/parser/-/parser-1.0.1.tgz",
+      "integrity": "sha512-opmV19kN1JsK0T6HhhokHpcVkqKpF+x2pPDKKM2ThHtZAB5F4PROopk0amuVYK5qMrIA4erzpNm8gmPNJgMDxQ==",
       "license": "MIT",
       "dependencies": {
         "langium": "^4.0.0"
@@ -4796,6 +4796,16 @@
         "win32"
       ]
     },
+    "node_modules/@upsetjs/venn.js": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/@upsetjs/venn.js/-/venn.js-2.0.0.tgz",
+      "integrity": "sha512-WbBhLrooyePuQ1VZxrJjtLvTc4NVfpOyKx0sKqioq9bX1C1m7Jgykkn8gLrtwumBioXIqam8DLxp88Adbue6Hw==",
+      "license": "MIT",
+      "optionalDependencies": {
+        "d3-selection": "^3.0.0",
+        "d3-transition": "^3.0.1"
+      }
+    },
     "node_modules/@vitejs/plugin-vue": {
       "version": "6.0.3",
       "resolved": "https://registry.npmjs.org/@vitejs/plugin-vue/-/plugin-vue-6.0.3.tgz",
@@ -7135,9 +7145,9 @@
       }
     },
     "node_modules/dagre-d3-es": {
-      "version": "7.0.13",
-      "resolved": "https://registry.npmjs.org/dagre-d3-es/-/dagre-d3-es-7.0.13.tgz",
-      "integrity": "sha512-efEhnxpSuwpYOKRm/L5KbqoZmNNukHa/Flty4Wp62JRvgH2ojwVgPgdYyr4twpieZnyRDdIH7PY2mopX26+j2Q==",
+      "version": "7.0.14",
+      "resolved": "https://registry.npmjs.org/dagre-d3-es/-/dagre-d3-es-7.0.14.tgz",
+      "integrity": "sha512-P4rFMVq9ESWqmOgK+dlXvOtLwYg0i7u0HBGJER0LZDJT2VHIPAMZ/riPxqJceWMStH5+E61QxFra9kIS3AqdMg==",
       "license": "MIT",
       "dependencies": {
         "d3": "^7.9.0",
@@ -11129,27 +11139,28 @@
       }
     },
     "node_modules/mermaid": {
-      "version": "11.12.3",
-      "resolved": "https://registry.npmjs.org/mermaid/-/mermaid-11.12.3.tgz",
-      "integrity": "sha512-wN5ZSgJQIC+CHJut9xaKWsknLxaFBwCPwPkGTSUYrTiHORWvpT8RxGk849HPnpUAQ+/9BPRqYb80jTpearrHzQ==",
+      "version": "11.13.0",
+      "resolved": "https://registry.npmjs.org/mermaid/-/mermaid-11.13.0.tgz",
+      "integrity": "sha512-fEnci+Immw6lKMFI8sqzjlATTyjLkRa6axrEgLV2yHTfv8r+h1wjFbV6xeRtd4rUV1cS4EpR9rwp3Rci7TRWDw==",
       "license": "MIT",
       "dependencies": {
         "@braintree/sanitize-url": "^7.1.1",
-        "@iconify/utils": "^3.0.1",
-        "@mermaid-js/parser": "^1.0.0",
+        "@iconify/utils": "^3.0.2",
+        "@mermaid-js/parser": "^1.0.1",
         "@types/d3": "^7.4.3",
-        "cytoscape": "^3.29.3",
+        "@upsetjs/venn.js": "^2.0.0",
+        "cytoscape": "^3.33.1",
         "cytoscape-cose-bilkent": "^4.1.0",
         "cytoscape-fcose": "^2.2.0",
         "d3": "^7.9.0",
         "d3-sankey": "^0.12.3",
-        "dagre-d3-es": "7.0.13",
-        "dayjs": "^1.11.18",
-        "dompurify": "^3.2.5",
-        "katex": "^0.16.22",
+        "dagre-d3-es": "7.0.14",
+        "dayjs": "^1.11.19",
+        "dompurify": "^3.3.1",
+        "katex": "^0.16.25",
         "khroma": "^2.1.0",
         "lodash-es": "^4.17.23",
-        "marked": "^16.2.1",
+        "marked": "^16.3.0",
         "roughjs": "^4.6.6",
         "stylis": "^4.3.6",
         "ts-dedent": "^2.2.0",
diff --git a/package.json b/package.json
index 6f5191d518..168edafc9f 100644
--- a/package.json
+++ b/package.json
@@ -54,7 +54,7 @@
     "idiomorph": "0.3.0",
     "jquery": "3.7.1",
     "katex": "0.16.38",
-    "mermaid": "11.12.3",
+    "mermaid": "11.13.0",
     "mini-css-extract-plugin": "2.10.0",
     "minimatch": "10.2.4",
     "pdfobject": "2.3.0",